Thermodynamics

Thermodynamics

3 min read Updated Apr 18, 2026

Thermodynamics tells you whether a reaction can happen spontaneously. The key quantity is Gibbs free energy (G). A reaction is spontaneous if its ΔG is negative.

Free energy, coupling, and why ATP works

Bioenergetics
The one equation ΔG = ΔH − TΔS ΔH
heat exchanged
T
temperature, in kelvin
ΔS
change in disorder
ΔG reaches zero at equilibrium. Nothing stops; forward and back run equally fast. Spontaneous is not the same as fast G ΔG activation energy An enzyme lowers the hump (dashed) and never moves the ends. Same ΔG, same equilibrium, sooner. Exergonic ΔG < 0
Energy is released. Runs on its own. Catabolism, and ATP hydrolysis.
Endergonic ΔG > 0
Energy must be supplied. Will not run alone. Anabolism, and pumping against a gradient.
Coupling: the cell's only trick Glucose + Pi → G6P ΔG = +3.3 kcal/mol + ATP → ADP + Pi ΔG = −7.3 kcal/mol Glucose + ATP → G6P + ADP ΔG = −4.0 kcal/mol · it runs The two are run by one enzyme in one active site, so the universe only ever sees the sum. This is hexokinase, and it is the shape of every driven reaction in the book: pumping ions, building polymers, contracting muscle. Why ATP releases so much Charge repulsion
Three negatives crowded together push apart. Cutting one off relieves it.
Resonance
Free inorganic phosphate spreads its charge over more structures than the bound form.
Solvation
Two smaller products are hydrated more comfortably than one large one.
Nothing exotic in the bond. The products are simply more stable.
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Negative ΔG: spontaneous, releases energy Positive ΔG: needs to be paid for ATP, the currency The coupled result
The cell never breaks thermodynamics; it just does its accounting in pairs. An unfavorable reaction is run by physically joining it to a favorable one, so what the universe sees is a single reaction with a negative ΔG.

The Equation

ΔG=ΔHTΔS\Delta G = \Delta H - T\Delta S

  • ΔH: enthalpy change (heat). Negative ΔH = exothermic (releases heat).
  • ΔS: entropy change. Positive ΔS = more disorder.
  • T: absolute temperature.

ΔG Sign and Direction

  • ΔG < 0 (exergonic): spontaneous as written.
  • ΔG > 0 (endergonic): non-spontaneous as written (but can be driven by coupling).
  • ΔG = 0: equilibrium.

Magnitude of ΔG does NOT tell you how fast the reaction goes - only thermodynamics, not kinetics. Enzymes change the rate (by lowering activation energy) without changing ΔG.

ΔG vs. ΔG°’

  • ΔG°’: standard free energy change at physiologic conditions (pH 7, 1 M substrates). A property of the reaction.
  • ΔG: actual free energy change under cellular conditions. Depends on actual concentrations. What matters biologically.

A reaction with ΔG°’ > 0 can still have ΔG < 0 in a cell if substrate/product ratios favor forward flow.

ΔG=ΔG+RTlnQ\Delta G = \Delta G^{\circ'} + RT \ln Q

where Q is the mass action ratio (products/substrates at the moment). Cells maintain non-equilibrium concentrations to keep metabolism flowing.

What does a negative ΔG indicate about a reaction?
Click to reveal answer
The reaction is exergonic - thermodynamically spontaneous as written. Energy is released, and the reaction proceeds toward products until equilibrium. Magnitude of ΔG does not say how fast the reaction runs; a catalyst (enzyme) is needed to achieve biologically useful rates.
How can a reaction with positive ΔG°’ still be favorable in the cell?
Click to reveal answer
Because ΔG depends on actual concentrations, not just ΔG°’. If the cell keeps product concentration low (by consuming it in the next step) or substrate concentration high, the mass action term (RT ln Q) can be strongly negative, making the actual ΔG negative. This is how unfavorable standard ΔG°’ reactions proceed in cells - through concentration control.
How do enzymes affect ΔG of a reaction?
Click to reveal answer
They do not. Enzymes lower the activation energy (Ea), speeding up the rate of both forward and reverse reactions. ΔG is determined only by the energy difference between reactants and products, which enzymes do not change. A reaction that is thermodynamically impossible stays impossible with or without an enzyme.