Eukaryotic vs. Prokaryotic

Eukaryotic vs. Prokaryotic

4 min read Updated Mar 26, 2026

All living organisms (viruses excluded, since they are not alive) fall into one of two cell types: eukaryotic or prokaryotic. The names tell you the key difference if you know a bit of Greek.

  • Eu- means “true.” Karyon means “kernel” (nucleus). Eukaryotic cells have a true nucleus - their DNA is enclosed in a membrane-bound compartment.
  • Pro- means “before.” Prokaryotic cells came before eukaryotes in evolutionary history. They are simpler - no true nucleus, no membrane-bound organelles. Their DNA floats freely in a region called the nucleoid.
Diagram of a prokaryotic cell showing cell wall, cell membrane, capsule, pili, flagellum, ribosomes, nucleoid region with circular DNA
Structure of a typical prokaryotic cell, highlighting the nucleoid region, ribosomes, and external structures. Credit: OpenStax Biology 2e, CC BY 4.0
Relative sizes of cells and organisms on a logarithmic scale
Relative sizes of cells and organisms on a logarithmic scale, from atoms to multicellular organisms. Credit: OpenStax Biology 2e, CC BY 4.0

The Three Domains of Life

When we classify living organisms, they are grouped into three domains: Archaea, Bacteria, and Eukarya. Two of these domains (Archaea and Bacteria) are prokaryotic; one (Eukarya) is eukaryotic.

FeatureBacteriaArchaeaEukarya
Cell typeProkaryoticProkaryoticEukaryotic
Nucleus / membrane-bound organellesNoNoYes
DNA shapeCircularCircularLinear chromosomes
Ribosomes70S70S80S
Cell wallPeptidoglycanNo peptidoglycanCellulose (plants), chitin (fungi), none (animals)
HistonesNoYesYes
Initiation amino acidFormylmethionine (fMet)MethionineMethionine
ReproductionBinary fissionBinary fissionMitosis / meiosis

Why Eukaryotic Cells Have Organelles: Endosymbiotic Theory

Eukaryotic cells are not just “prokaryotes plus a nucleus.” They are prokaryotes that ate other prokaryotes and kept them as internal tenants. The endosymbiotic theory proposes that mitochondria (and, in plants, chloroplasts) are the descendants of free-living prokaryotes that were engulfed by a larger host cell billions of years ago.

Evidence: mitochondria have their own circular DNA, their own 70S ribosomes, a double membrane, and they divide by binary fission. We cover this in depth in Mitochondria.

Archaea in One Minute

Archaea look like bacteria (unicellular, no nucleus, circular DNA) but their molecular machinery resembles eukaryotes. The three features the MCAT wants you to know:

  1. Histones package Archaeal DNA (bacteria lack histones).
  2. Methionine starts translation (bacteria use formylmethionine).
  3. Archaeal RNA polymerases resemble the eukaryotic enzymes.

Many Archaea are extremophiles (hot springs, salt lakes, deep-sea vents) and most are chemosynthetic, pulling energy from inorganic reactions rather than sunlight.

What three features do Archaea share with eukaryotes but NOT with bacteria?
Click to reveal answer
1) Histones for DNA organization. 2) Methionine (not fMet) as the initiator amino acid. 3) Eukaryote-like RNA polymerases. These point to a shared ancestry between Archaea and Eukarya.
What evidence supports the endosymbiotic origin of mitochondria?
Click to reveal answer
Mitochondria have circular DNA, 70S ribosomes, a double membrane, and divide by binary fission - all bacterial features. They are the descendants of an aerobic prokaryote engulfed by an ancestral eukaryotic cell.