The Small Intestine

The Small Intestine

6 min read Updated Mar 26, 2026

The small intestine is the MVP of digestion. Despite its name (“small” refers to diameter, not length), it stretches about 6-7 meters and is where 90% of digestion and absorption occur. Its secret weapon is surface area - an internal architecture of folds, fingers, and micro-fingers that gives it the absorptive area of a tennis court packed into a tube you could coil inside your abdomen.

The Three Segments

The Duodenum: Where Chemistry Happens

The duodenum is the first and shortest segment (~25 cm). It receives:

  • Acidic chyme from the stomach through the pyloric sphincter
  • Bile from the liver/gallbladder via the common bile duct
  • Pancreatic juice from the pancreas via the pancreatic duct

Both the common bile duct and pancreatic duct empty into the duodenum at the ampulla of Vater (hepatopancreatic ampulla), controlled by the sphincter of Oddi.

The duodenum is the principal site for chemical digestion. It neutralizes stomach acid with pancreatic bicarbonate, emulsifies fats with bile, and unleashes a battery of pancreatic and brush-border enzymes.

The duodenum also has an endocrine role: it secretes secretin (in response to acid) and cholecystokinin (CCK) (in response to fats and proteins).

The Jejunum: Absorption Powerhouse

The jejunum is the middle segment and the primary site of nutrient absorption. Its walls are densely packed with villi, giving it a velvety appearance. Most amino acids, monosaccharides, fatty acids, and water-soluble vitamins are absorbed here.

Water-soluble nutrients (amino acids, monosaccharides) are absorbed into capillaries within each villus and travel via the hepatic portal vein to the liver for processing.

Fats take a different route - they enter lacteals (lymphatic vessels within each villus) and travel through the lymphatic system before entering the bloodstream.

The Ileum: The Final Stretch

The ileum is the longest segment and connects to the large intestine at the ileocecal valve. It has two specialized absorption jobs:

  1. Vitamin B12 - the intrinsic factor-B12 complex formed in the stomach is absorbed exclusively in the ileum by receptor-mediated endocytosis
  2. Bile salts - recycled back to the liver via the hepatic portal vein in a process called enterohepatic circulation (bile salts are reused 6-8 times per day)

The ileum also contains Peyer’s patches - clusters of lymphoid tissue that monitor intestinal bacteria and mount immune responses against pathogens. They are part of the gut-associated lymphoid tissue (GALT).

The Surface Area Amplification System

The small intestine achieves its enormous surface area through three levels of folding:

Detailed diagram of intestinal villi and microvilli showing the three levels of surface area amplification: circular folds, villi with capillaries and lacteal, and microvilli (brush border) on each enterocyte
The three levels of surface area amplification in the small intestine: circular folds, villi, and microvilli. Each villus contains a capillary network and a central lacteal. Credit: Lumen Learning / OpenStax Anatomy and Physiology, CC BY 4.0
LevelStructureSurface Area Increase
1Plicae circulares (circular folds)~3x the flat surface
2Villi (finger-like projections, ~1 mm tall)~10x more
3Microvilli (brush border on each enterocyte)~20x more

Each villus contains:

  • A capillary network for absorbing water-soluble nutrients
  • A lacteal (lymphatic vessel) for absorbing fats
  • Smooth muscle that contracts to “pump” absorbed nutrients into vessels

Intestinal Crypts: The Cell Factory

Labeled cross-section of an intestinal villus showing epithelial cells, capillary network, lacteal, and brush border
Structure of a single intestinal villus. Each villus contains a capillary network (absorbs amino acids, sugars) and a lacteal (absorbs fats as chylomicrons). The brush border of microvilli further increases surface area. Credit: Wikimedia Commons, Public Domain

At the base of each villus are crypts of Lieberkuhn (intestinal crypts). These contain stem cells that constantly produce new enterocytes. The intestinal epithelium renews itself every 3-5 days - one of the fastest cell turnover rates in the body.

A patient has the terminal ileum surgically removed. Which two substances will they be unable to absorb?
Click to reveal answer
Vitamin B12 and bile salts. B12-intrinsic factor complex is absorbed exclusively in the ileum. Bile salts are also reabsorbed in the ileum (enterohepatic circulation). Without the ileum, the patient will develop B12 deficiency (pernicious anemia) and fat malabsorption (bile salt depletion).
Absorbed amino acids and glucose enter capillaries in the villus. Where do they go next - directly to the heart, or somewhere else first?
Click to reveal answer
To the liver first, via the hepatic portal vein. Water-soluble nutrients (amino acids, monosaccharides) travel from intestinal capillaries to the hepatic portal vein to the liver for processing, detoxification, and storage before entering general circulation. Fats bypass this route - they enter lacteals and travel through the lymphatic system.